Home

Resume

Curtis Rueden
Laboratory for Optical and Computational Instrumentation
Rm 271 Animal Sciences
1675 Observatory Drive
Madison, WI 53706
Tel: (608) 263-8481
Email: curtis@restlesscoder.net

EDUCATION

M.S.   December 2001   Computer Sciences, University of Wisconsin-Madison
B.S.   June 2000   Computer Sciences, with Honors in the Liberal Arts,
University of Wisconsin-Madison

EXPERIENCE

2002-   Software Architect, Laboratory for Optical and Computational Instrumentation, Department of Molecular Biology, University of Wisconsin-Madison
2007-2008   Programmer, Eclipse Academic Systems, Madison, WI
2000-2001   Programmer (graduate), SSEC Visualization Project, Space Science and Engineering Center, University of Wisconsin-Madison
1997-2000   Programmer (undergraduate), SSEC Visualization Project, Space Science and Engineering Center, University of Wisconsin-Madison

INVITED PRESENTATIONS

"OME-XML." Workshop on Raw Image Formats in Structural Biology, Brookhaven National Laboratory, National Center for Macromolecular Imaging, Upton, NY (22 May 2008).

"OME at LOCI." Image Database Meeting, Janelia Farm Research Campus, Loudoun County, Virginia (26 Aug. 2007).

"OME-XML and Bio-Formats." Data and Image Analysis Special Interest Group, 13th Annual SBS Conference, Montreal, Canada (16 Apr. 2007).

"Bio-Formats." OME European Users Meeting, Paris, France (29 Mar. 2007).

"LOCI OME Progress Report." OME Users Meeting, 46th Annual ASCB Conference, San Diego, CA (11 Dec. 2006).

"OME-XML." BIRN Ontology Terminology Workshop, University of California, San Diego (7 Dec. 2006).

PUBLICATIONS

Linkert, M., C. T. Rueden, C. Allan, J. Burel, W. Moore, A. Patterson, B. Loranger, J. Moore, C. Neves, D. MacDonald, A. Tarkowska, C. Sticco, E. Hill, M. Rossner, K. W. Eliceiri and J. R. Swedlow. "Metadata matters: access to image data in the real world." The Journal of Cell Biology 189.5 (May 2010): 777-782. [full text]

Swedlow, J. R., I. G. Goldberg, K. W. Eliceiri and the OME Consortium. "Bioimage Informatics for Experimental Biology." Annual Review of Biophysics 38 (June 2009): 327-346. [full text]

Swedlow, J. R., C. T. Rueden, J. Burel, M. Linkert, B. Loranger, C. Allan and K. W. Eliceiri. "Open File Formats for High Content Analysis." High Content Screening: Science, Techniques, and Applications. Ed. Steven A. Haney. Hoboken, NJ: John Wiley & Sons, Inc., 2008. 319-328. [table of contents]

Provenzano, P. P., C. T. Rueden, S. M. Trier, L. Yan, S. M. Ponik, D. R. Inman, P. J. Keely and K. W. Eliceiri. "Nonlinear optical imaging and spectral-lifetime computational analysis of endogenous and exogenous fluorophores in breast cancer." J Biomed Opt 13.3 (May-June 2008): 031220. [abstract]

Provenzano, P. P., D. R. Inman, K. W. Eliceiri, J. G. Knittel, L. Yan, C. T. Rueden, J. G. White and P. J. Keely. "Collagen density promotes mammary tumor initiation and progression." BMC Medicine 6.11 (Apr. 2008). [abstract, full text]

Rueden, C. T. and K. W. Eliceiri. "Visualization approaches for multidimensional biological image data." BioTechniques 43 (July 2007): S31-S36. [full text]

Long Yan, C. T. Rueden, J. G. White, and K. W. Eliceiri. "Applications of Combined Spectral Lifetime Microscopy for Biology." BioTechniques 41.3 (Sep. 2006): 249-257. [abstract, full text]

Rueden, C. T. and K. W. Eliceiri. "VisBio: a Flexible Open-Source Visualization Package for Multidimensional Image Data." Microscopy Today 14.3 (May 2006): 6-10. [table of contents, full text]

Eliceiri, K. W. and C. Rueden. "Tools for Visualizing Multidimensional Images from Living Specimens." Photochemistry and Photobiology 81.5 (Apr. 2005): 1116-1122. [abstract]

Hibbard, W., C. Rueden, S. Emmerson, T. Rink, D. Glowacki, T. Whittaker, D. Murray, D. Fulker and J. Anderson. "Java distributed components for numerical visualization in VisAD." Communications of the ACM 48.3 (Mar. 2005): 98-104. [abstract, full text]

Rueden, C., K. W. Eliceiri and J. G. White. "VisBio: A Computational Tool for Visualization of Multidimensional Biological Image Data." Traffic 5.6 (June 2004): 411-417. [abstract, full text]

Rueden, C., K. W. Eliceiri and J. G. White. "VisBio: a Biological Tool for Visualization and Analysis." Computer Graphics 37.2 (May 2003): 5-7. [abstract]

Eliceiri, K. W., C. Rueden, W. A. Mohler, W. L. Hibbard and J. G. White. "Analysis of Multidimensional Biological Image Data." BioTechniques 33.6 (Dec. 2002): 1268-1273. [full text]

Hibbard, W., C. Rueden, S. Emmerson, T. Rink, D. Glowacki, T. Whittaker, D. Fulker and J. Anderson. "Java distributed objects for numerical visualization in VisAD." Communications of the ACM 45.4 (Apr. 2002): 160-170. [abstract]

Hibbard, W., S. Emmerson, C. Rueden, T. Rink, D. Glowacki, N. Rasmussen, D. Fulker and J. Anderson. "Collaborative visualization and computation in the earth sciences using VisAD." Preprints, Conf. Interactive Information and Processing Systems for Meteorology, Oceanography, and Hydrology. Dallas, Amer. Meteor. Soc. (1999): 478-480.

Hibbard, W., C. Rueden, T. Rink, S. Emmerson, D. Fulker and J. Anderson. "The VisAD Java Class Library for Scientific Data and Visualization." Scientific Visualization Conference dagstuhl '97 (1997): 115-123. [abstract, abstract, abstract]

RELATED ARTICLES

Marx, V. "OME’s Commercial Arm Glencoe to Sell Licenses for Open-Source Bio-Formats Library." BioInform 12.47 (5 Dec. 2008). [full text]

Collins, T. J. "ImageJ for microscopy." BioTechniques 43 (Jul. 2007): S25-S30. [full text]

Eisenstein, M. "Microscopy: Something to see." Nature 443 (26 Oct. 2006): 1017-1021. [full text]

Eisenstein, M. "Microscopy: Tower of Babel." Nature 443 (26 Oct. 2006): 1021. [full text]

Back to top